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158 lines
5.1 KiB
158 lines
5.1 KiB
5 years ago
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2012 Désiré Nuentsa-Wakam <desire.nuentsa_wakam@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_ORDERING_H
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#define EIGEN_ORDERING_H
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namespace Eigen {
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#include "Eigen_Colamd.h"
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namespace internal {
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/** \internal
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* \ingroup OrderingMethods_Module
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* \param[in] A the input non-symmetric matrix
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* \param[out] symmat the symmetric pattern A^T+A from the input matrix \a A.
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* FIXME: The values should not be considered here
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*/
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template<typename MatrixType>
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void ordering_helper_at_plus_a(const MatrixType& A, MatrixType& symmat)
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{
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MatrixType C;
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C = A.transpose(); // NOTE: Could be costly
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for (int i = 0; i < C.rows(); i++)
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{
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for (typename MatrixType::InnerIterator it(C, i); it; ++it)
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it.valueRef() = 0.0;
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}
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symmat = C + A;
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}
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}
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#ifndef EIGEN_MPL2_ONLY
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/** \ingroup OrderingMethods_Module
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* \class AMDOrdering
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*
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* Functor computing the \em approximate \em minimum \em degree ordering
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* If the matrix is not structurally symmetric, an ordering of A^T+A is computed
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* \tparam StorageIndex The type of indices of the matrix
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* \sa COLAMDOrdering
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*/
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template <typename StorageIndex>
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class AMDOrdering
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{
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public:
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typedef PermutationMatrix<Dynamic, Dynamic, StorageIndex> PermutationType;
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/** Compute the permutation vector from a sparse matrix
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* This routine is much faster if the input matrix is column-major
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*/
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template <typename MatrixType>
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void operator()(const MatrixType& mat, PermutationType& perm)
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{
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// Compute the symmetric pattern
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SparseMatrix<typename MatrixType::Scalar, ColMajor, StorageIndex> symm;
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internal::ordering_helper_at_plus_a(mat,symm);
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// Call the AMD routine
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//m_mat.prune(keep_diag());
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internal::minimum_degree_ordering(symm, perm);
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}
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/** Compute the permutation with a selfadjoint matrix */
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template <typename SrcType, unsigned int SrcUpLo>
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void operator()(const SparseSelfAdjointView<SrcType, SrcUpLo>& mat, PermutationType& perm)
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{
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SparseMatrix<typename SrcType::Scalar, ColMajor, StorageIndex> C; C = mat;
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// Call the AMD routine
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// m_mat.prune(keep_diag()); //Remove the diagonal elements
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internal::minimum_degree_ordering(C, perm);
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}
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};
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#endif // EIGEN_MPL2_ONLY
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/** \ingroup OrderingMethods_Module
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* \class NaturalOrdering
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*
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* Functor computing the natural ordering (identity)
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*
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* \note Returns an empty permutation matrix
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* \tparam StorageIndex The type of indices of the matrix
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*/
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template <typename StorageIndex>
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class NaturalOrdering
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{
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public:
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typedef PermutationMatrix<Dynamic, Dynamic, StorageIndex> PermutationType;
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/** Compute the permutation vector from a column-major sparse matrix */
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template <typename MatrixType>
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void operator()(const MatrixType& /*mat*/, PermutationType& perm)
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{
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perm.resize(0);
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}
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};
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/** \ingroup OrderingMethods_Module
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* \class COLAMDOrdering
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*
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* \tparam StorageIndex The type of indices of the matrix
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*
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* Functor computing the \em column \em approximate \em minimum \em degree ordering
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* The matrix should be in column-major and \b compressed format (see SparseMatrix::makeCompressed()).
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*/
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template<typename StorageIndex>
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class COLAMDOrdering
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{
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public:
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typedef PermutationMatrix<Dynamic, Dynamic, StorageIndex> PermutationType;
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typedef Matrix<StorageIndex, Dynamic, 1> IndexVector;
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/** Compute the permutation vector \a perm form the sparse matrix \a mat
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* \warning The input sparse matrix \a mat must be in compressed mode (see SparseMatrix::makeCompressed()).
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*/
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template <typename MatrixType>
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void operator() (const MatrixType& mat, PermutationType& perm)
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{
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eigen_assert(mat.isCompressed() && "COLAMDOrdering requires a sparse matrix in compressed mode. Call .makeCompressed() before passing it to COLAMDOrdering");
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StorageIndex m = StorageIndex(mat.rows());
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StorageIndex n = StorageIndex(mat.cols());
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StorageIndex nnz = StorageIndex(mat.nonZeros());
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// Get the recommended value of Alen to be used by colamd
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StorageIndex Alen = internal::colamd_recommended(nnz, m, n);
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// Set the default parameters
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double knobs [COLAMD_KNOBS];
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StorageIndex stats [COLAMD_STATS];
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internal::colamd_set_defaults(knobs);
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IndexVector p(n+1), A(Alen);
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for(StorageIndex i=0; i <= n; i++) p(i) = mat.outerIndexPtr()[i];
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for(StorageIndex i=0; i < nnz; i++) A(i) = mat.innerIndexPtr()[i];
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// Call Colamd routine to compute the ordering
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StorageIndex info = internal::colamd(m, n, Alen, A.data(), p.data(), knobs, stats);
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EIGEN_UNUSED_VARIABLE(info);
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eigen_assert( info && "COLAMD failed " );
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perm.resize(n);
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for (StorageIndex i = 0; i < n; i++) perm.indices()(p(i)) = i;
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}
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};
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} // end namespace Eigen
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#endif
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